HL_9O3W_072

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_072 not in the Motif Atlas

Homologous match to HL_4V9F_072

Geometric discrepancy: 0.1357

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9O3W|1|L7|G|86
9O3W|1|L7|G|87
9O3W|1|L7|A|88
9O3W|1|L7|G|89
9O3W|1|L7|A|90
9O3W|1|L7|C|91

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large ribosomal subunit protein uL16

Chain LS

Large ribosomal subunit protein eL20