HL_9O3W_082

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9O3W|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_082 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.1353

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9O3W|1|S2|G|156
9O3W|1|S2|U|157
9O3W|1|S2|A|158
9O3W|1|S2|A2M|159
9O3W|1|S2|U|160
9O3W|1|S2|U|161
9O3W|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS6

Chain SY

40S ribosomal protein S24