HL_9O3W_083

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_083 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3598

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9O3W|1|S2|C|196
9O3W|1|S2|U|197
9O3W|1|S2|U|198
9O3W|1|S2|C|199
9O3W|1|S2|G|200
9O3W|1|S2|C|201
9O3W|1|S2|G|202
9O3W|1|S2|G|203

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

Small ribosomal subunit protein eS8