HL_9O3W_098

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_098 not in the Motif Atlas

Homologous match to HL_9H3G_094

Geometric discrepancy: 0.0355

The information below is about HL_9H3G_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9O3W|1|S2|C|994
9O3W|1|S2|G|995
9O3W|1|S2|A|996
9O3W|1|S2|A|997
9O3W|1|S2|A|998
9O3W|1|S2|G|999

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

Small ribosomal subunit protein uS15

Chain Sa

Small ribosomal subunit protein eS26