HL_9O3W_100

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_100 not in the Motif Atlas

Geometric match to HL_9PN5_064

Geometric discrepancy: 0.1783

The information below is about HL_9PN5_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9O3W|1|S2|U|1114
9O3W|1|S2|U|1115
9O3W|1|S2|C|1116
9O3W|1|S2|C|1117
9O3W|1|S2|C|1118
9O3W|1|S2|A|1119

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein eS1

Chain Sb

Small ribosomal subunit protein eS27