HL_9O3W_104
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9O3W|1|S2|U|1300, 9O3W|1|S2|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O3W_104 not in the Motif Atlas
- Homologous match to HL_9H3G_100
- Geometric discrepancy: 0.1352
- The information below is about HL_9H3G_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9O3W|1|S2|A|1295
9O3W|1|S2|U|1296
9O3W|1|S2|U|1297
9O3W|1|S2|G|1298
9O3W|1|S2|A|1299
9O3W|1|S2|U|1300
9O3W|1|S2|A|1301
9O3W|1|S2|G|1302
9O3W|1|S2|C|1303
9O3W|1|S2|U|1304
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain Sd
- Small ribosomal subunit protein uS14
- Chain Sf
- Ubiquitin-ribosomal protein eS31 fusion protein
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