HL_9O3W_104

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9O3W|1|S2|U|1300, 9O3W|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|A|1295
9O3W|1|S2|U|1296
9O3W|1|S2|U|1297
9O3W|1|S2|G|1298
9O3W|1|S2|A|1299
9O3W|1|S2|U|1300
9O3W|1|S2|A|1301
9O3W|1|S2|G|1302
9O3W|1|S2|C|1303
9O3W|1|S2|U|1304

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein