HL_9O3W_106

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

9O3W|1|S2|U|1371

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_106 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.0475

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9O3W|1|S2|G|1366
9O3W|1|S2|PSU|1367
9O3W|1|S2|U|1368
9O3W|1|S2|A|1369
9O3W|1|S2|A|1370
9O3W|1|S2|U|1371
9O3W|1|S2|U|1372
9O3W|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein eS17