HL_9O3Y_078

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUCGAGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3Y_078 not in the Motif Atlas

Homologous match to HL_9SFQ_004

Geometric discrepancy: 0.0943

The information below is about HL_9SFQ_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

138

Unit IDs

9O3Y|1|Pt|G|53
9O3Y|1|Pt|U|54
9O3Y|1|Pt|U|55
9O3Y|1|Pt|C|56
9O3Y|1|Pt|G|57
9O3Y|1|Pt|A|58
9O3Y|1|Pt|G|59
9O3Y|1|Pt|C|60
9O3Y|1|Pt|C|61

Current chains

Chain Pt

P-site lysyl-tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large ribosomal subunit protein uL5

Chain Lo

Large ribosomal subunit protein eL42