HL_9OVC_008

3D structure

PDB id

9OVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGAAAUGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OVC_008 not in the Motif Atlas

Geometric match to HL_2A64_005

Geometric discrepancy: 0.281

The information below is about HL_2A64_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48408.1

Basepair signature

cWW-tSH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OVC|1|A|G|288
9OVC|1|A|G|289
9OVC|1|A|A|290
9OVC|1|A|A|291
9OVC|1|A|A|292
9OVC|1|A|U|293
9OVC|1|A|G|294
9OVC|1|A|A|295
9OVC|1|A|A|296
9OVC|1|A|C|297

Current chains

Chain A

RNase P ribozyme

Nearby chains