HL_9OWN_002

3D structure

PDB id

9OWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (Consensus)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGAGAUG

Length

8 nucleotides

Bulged bases

9OWN|1|A|U|75

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OWN_002 not in the Motif Atlas

Homologous match to HL_2A64_002

Geometric discrepancy: 0.3308

The information below is about HL_2A64_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9OWN|1|A|C|69
9OWN|1|A|U|70
9OWN|1|A|G|71
9OWN|1|A|A|72
9OWN|1|A|G|73
9OWN|1|A|A|74
9OWN|1|A|U|75
9OWN|1|A|G|76

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains