HL_9P6Z_079

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9P6Z|1|L5|C|5023, 9P6Z|1|L5|C|5024, 9P6Z|1|L5|C|5025, 9P6Z|1|L5|U|5026, 9P6Z|1|L5|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P6Z_079 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3491

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9P6Z|1|L5|C|5021
9P6Z|1|L5|U|5022
9P6Z|1|L5|C|5023
9P6Z|1|L5|C|5024
9P6Z|1|L5|C|5025
9P6Z|1|L5|U|5026
9P6Z|1|L5|C|5027
9P6Z|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8