HL_9P6Z_124

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

9P6Z|1|Zt|C|16, 9P6Z|1|Zt|U|18, 9P6Z|1|Zt|G|19, 9P6Z|1|Zt|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P6Z_124 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.2963

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9P6Z|1|Zt|C|13
9P6Z|1|Zt|A|14
9P6Z|1|Zt|G|15
9P6Z|1|Zt|C|16
9P6Z|1|Zt|U|18
9P6Z|1|Zt|G|19
9P6Z|1|Zt|U|20
9P6Z|1|Zt|A|21
9P6Z|1|Zt|G|22

Current chains

Chain Zt

Z site tRNA

Nearby chains