HL_9P72_017

3D structure

PDB id

9P72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

9P72|1|L5|G|1178, 9P72|1|L5|U|1179, 9P72|1|L5|C|1181, 9P72|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P72|1|L5|G|1171
9P72|1|L5|C|1172
9P72|1|L5|G|1173
9P72|1|L5|G|1174
9P72|1|L5|A|1175
9P72|1|L5|C|1176
9P72|1|L5|U|1177
9P72|1|L5|G|1178
9P72|1|L5|U|1179
9P72|1|L5|C|1180
9P72|1|L5|C|1181
9P72|1|L5|C|1182
9P72|1|L5|C|1183
9P72|1|L5|A|1184
9P72|1|L5|G|1185
9P72|1|L5|U|1186
9P72|1|L5|G|1187
9P72|1|L5|C|1188
9P72|1|L5|G|1189
9P72|1|L5|C|1190

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like