HL_9P78_040

3D structure

PDB id

9P78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate 3 with E-site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9P78|1|L5|U|2530, 9P78|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P78|1|L5|G|2523
9P78|1|L5|U|2524
9P78|1|L5|U|2525
9P78|1|L5|C|2526
9P78|1|L5|A|2527
9P78|1|L5|G|2528
9P78|1|L5|A|2529
9P78|1|L5|U|2530
9P78|1|L5|C|2531
9P78|1|L5|C|2532

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CA

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34