HL_9P79_012

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

9P79|1|L5|G|1178, 9P79|1|L5|U|1179, 9P79|1|L5|C|1181, 9P79|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|C|1172
9P79|1|L5|G|1173
9P79|1|L5|G|1174
9P79|1|L5|A|1175
9P79|1|L5|C|1176
9P79|1|L5|U|1177
9P79|1|L5|G|1178
9P79|1|L5|U|1179
9P79|1|L5|C|1180
9P79|1|L5|C|1181
9P79|1|L5|C|1182
9P79|1|L5|C|1183
9P79|1|L5|A|1184
9P79|1|L5|G|1185
9P79|1|L5|U|1186
9P79|1|L5|G|1187
9P79|1|L5|C|1188
9P79|1|L5|G|1189

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like