HL_9P79_093

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P79_093 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.1377

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9P79|1|S2|C|618
9P79|1|S2|A|619
9P79|1|S2|G|620
9P79|1|S2|C|621
9P79|1|S2|C|622
9P79|1|S2|G|623

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

SERPINE1 mRNA-binding protein 1

Chain SX

40S ribosomal protein S23