HL_9P79_100

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9P79|1|S2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|S2|G|1054
9P79|1|S2|A|1055
9P79|1|S2|PSU|1056
9P79|1|S2|C|1057
9P79|1|S2|A|1058
9P79|1|S2|G|1059
9P79|1|S2|A|1060
9P79|1|S2|U|1061
9P79|1|S2|A|1062
9P79|1|S2|C|1063
9P79|1|S2|C|1064

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26