HL_9P7A_015

3D structure

PDB id

9P7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human hibernating class2 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

9P7A|1|L5|G|1178, 9P7A|1|L5|U|1179, 9P7A|1|L5|C|1181, 9P7A|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7A|1|L5|G|1170
9P7A|1|L5|G|1171
9P7A|1|L5|C|1172
9P7A|1|L5|G|1173
9P7A|1|L5|G|1174
9P7A|1|L5|A|1175
9P7A|1|L5|C|1176
9P7A|1|L5|U|1177
9P7A|1|L5|G|1178
9P7A|1|L5|U|1179
9P7A|1|L5|C|1180
9P7A|1|L5|C|1181
9P7A|1|L5|C|1182
9P7A|1|L5|C|1183
9P7A|1|L5|A|1184
9P7A|1|L5|G|1185
9P7A|1|L5|U|1186
9P7A|1|L5|G|1187
9P7A|1|L5|C|1188
9P7A|1|L5|G|1189
9P7A|1|L5|C|1190
9P7A|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like