HL_9P7D_027

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

9P7D|1|L5|A|1765, 9P7D|1|L5|A|1766, 9P7D|1|L5|A|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7D|1|L5|G|1759
9P7D|1|L5|G|1760
9P7D|1|L5|G|1761
9P7D|1|L5|C|1762
9P7D|1|L5|C|1763
9P7D|1|L5|G|1764
9P7D|1|L5|A|1765
9P7D|1|L5|A|1766
9P7D|1|L5|A|1767
9P7D|1|L5|C|1768
9P7D|1|L5|G|1769
9P7D|1|L5|A|1770
9P7D|1|L5|U|1771
9P7D|1|L5|C|1772
9P7D|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain SP

Small ribosomal subunit protein uS19