HL_9P7D_052

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9P7D|1|L5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7D_052 not in the Motif Atlas

Homologous match to HL_8GLP_051

Geometric discrepancy: 0.2244

The information below is about HL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9P7D|1|L5|C|3668
9P7D|1|L5|G|3669
9P7D|1|L5|C|3670
9P7D|1|L5|G|3671
9P7D|1|L5|G|3672
9P7D|1|L5|C|3673
9P7D|1|L5|G|3674

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15