HL_9P7D_057

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

9P7D|1|L5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7D_057 not in the Motif Atlas

Homologous match to HL_8GLP_057

Geometric discrepancy: 0.5932

The information below is about HL_8GLP_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.4

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9P7D|1|L5|A|4098
9P7D|1|L5|G|4099
9P7D|1|L5|C|4100
9P7D|1|L5|C|4101
9P7D|1|L5|C|4102
9P7D|1|L5|C|4103
9P7D|1|L5|G|4104
9P7D|1|L5|A|4105
9P7D|1|L5|G|4106
9P7D|1|L5|G|4107
9P7D|1|L5|G|4108
9P7D|1|L5|G|4109
9P7D|1|L5|C|4110
9P7D|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a