HL_9P7E_001

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

9P7E|1|Et|C|16, 9P7E|1|Et|U|18, 9P7E|1|Et|G|19, 9P7E|1|Et|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7E_001 not in the Motif Atlas

Homologous match to HL_2AZX_004

Geometric discrepancy: 0.1864

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

9P7E|1|Et|C|13
9P7E|1|Et|A|14
9P7E|1|Et|G|15
9P7E|1|Et|C|16
9P7E|1|Et|U|18
9P7E|1|Et|G|19
9P7E|1|Et|U|20
9P7E|1|Et|A|21
9P7E|1|Et|G|22

Current chains

Chain Et

E site tRNA

Nearby chains