HL_9P7F_076

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7F_076 not in the Motif Atlas

Homologous match to HL_9AXU_061

Geometric discrepancy: 0.2624

The information below is about HL_9AXU_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9P7F|1|L5|C|4603
9P7F|1|L5|G|4604
9P7F|1|L5|A|4605
9P7F|1|L5|G|4606
9P7F|1|L5|A|4607
9P7F|1|L5|G|4608

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40