HL_9P7G_012

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9P7G|1|L5|G|315, 9P7G|1|L5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7G_012 not in the Motif Atlas

Homologous match to HL_8GLP_009

Geometric discrepancy: 0.0723

The information below is about HL_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9P7G|1|L5|G|314
9P7G|1|L5|G|315
9P7G|1|L5|U|316
9P7G|1|L5|A|317
9P7G|1|L5|A|318
9P7G|1|L5|A|319
9P7G|1|L5|C|320
9P7G|1|L5|U|321
9P7G|1|L5|C|322
9P7G|1|L5|C|323

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a