HL_9P7G_026

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9P7G|1|L5|U|1596, 9P7G|1|L5|A|1600, 9P7G|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7G_026 not in the Motif Atlas

Homologous match to HL_8GLP_023

Geometric discrepancy: 0.1357

The information below is about HL_8GLP_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.4

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

13

Unit IDs

9P7G|1|L5|A|1593
9P7G|1|L5|C|1594
9P7G|1|L5|G|1595
9P7G|1|L5|U|1596
9P7G|1|L5|G|1597
9P7G|1|L5|C|1598
9P7G|1|L5|A|1599
9P7G|1|L5|A|1600
9P7G|1|L5|A|1601
9P7G|1|L5|U|1602

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37