HL_9P7H_104

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9P7H|1|S2|U|540, 9P7H|1|S2|U|541, 9P7H|1|S2|U|542, 9P7H|1|S2|C|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7H_104 not in the Motif Atlas

Geometric match to HL_9H3G_103

Geometric discrepancy: 0.2719

The information below is about HL_9H3G_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

9P7H|1|S2|C|539
9P7H|1|S2|U|540
9P7H|1|S2|U|541
9P7H|1|S2|U|542
9P7H|1|S2|C|543
9P7H|1|S2|G|544

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains