HL_9P7W_063

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

9P7W|1|L5|G|4099, 9P7W|1|L5|G|4104, 9P7W|1|L5|A|4105, 9P7W|1|L5|G|4109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7W|1|L5|A|4098
9P7W|1|L5|G|4099
9P7W|1|L5|C|4100
9P7W|1|L5|C|4101
9P7W|1|L5|C|4102
9P7W|1|L5|C|4103
9P7W|1|L5|G|4104
9P7W|1|L5|A|4105
9P7W|1|L5|G|4106
9P7W|1|L5|G|4107
9P7W|1|L5|G|4108
9P7W|1|L5|G|4109
9P7W|1|L5|C|4110
9P7W|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a