HL_9P7Y_004

3D structure

PDB id

9P7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

9P7Y|1|Et|C|16, 9P7Y|1|Et|U|18, 9P7Y|1|Et|G|19, 9P7Y|1|Et|U|20, 9P7Y|1|Et|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7Y_004 not in the Motif Atlas

Homologous match to HL_5UD5_001

Geometric discrepancy: 0.1434

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9P7Y|1|Et|C|13
9P7Y|1|Et|A|14
9P7Y|1|Et|G|15
9P7Y|1|Et|C|16
9P7Y|1|Et|U|18
9P7Y|1|Et|G|19
9P7Y|1|Et|U|20
9P7Y|1|Et|A|21
9P7Y|1|Et|G|22

Current chains

Chain Et

E site tRNA

Nearby chains