HL_9P8B_043

3D structure

PDB id

9P8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P8B_043 not in the Motif Atlas

Homologous match to HL_8GLP_035

Geometric discrepancy: 0.0478

The information below is about HL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9P8B|1|L5|C|2458
9P8B|1|L5|G|2459
9P8B|1|L5|A|2460
9P8B|1|L5|G|2461
9P8B|1|L5|C|2462
9P8B|1|L5|G|2463

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37