HL_9P8B_070

3D structure

PDB id

9P8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P8B_070 not in the Motif Atlas

Homologous match to HL_9PN5_054

Geometric discrepancy: 0.2082

The information below is about HL_9PN5_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9P8B|1|L5|G|4250
9P8B|1|L5|A|4251
9P8B|1|L5|C|4252
9P8B|1|L5|A|4253
9P8B|1|L5|G|4254
9P8B|1|L5|A|4255
9P8B|1|L5|A|4256
9P8B|1|L5|A|4257
9P8B|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11