HL_9P8B_075

3D structure

PDB id

9P8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8B|1|L5|C|4417
9P8B|1|L5|G|4418
9P8B|1|L5|U|4419
9P8B|1|L5|U|4420
9P8B|1|L5|C|4421
9P8B|1|L5|A|4422
9P8B|1|L5|U|4423
9P8B|1|L5|A|4424
9P8B|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain LI

Ribosomal protein uL16-like

Chain Lm

Large ribosomal subunit protein eL40