HL_9P8B_094
3D structure
- PDB id
- 9P8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF1A-A/T-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CCUAACACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9P8B_094 not in the Motif Atlas
- Homologous match to HL_5J8B_109
- Geometric discrepancy: 0.104
- The information below is about HL_5J8B_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9P8B|1|Pt|C|31
9P8B|1|Pt|C|32
9P8B|1|Pt|U|33
9P8B|1|Pt|A|34
9P8B|1|Pt|A|35
9P8B|1|Pt|C|36
9P8B|1|Pt|A|37
9P8B|1|Pt|C|38
9P8B|1|Pt|G|39
Current chains
- Chain Pt
- P site tRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SQ
- Small ribosomal subunit protein uS9
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