HL_9P8B_124

3D structure

PDB id

9P8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9P8B|1|S2|C|1419, 9P8B|1|S2|G|1420, 9P8B|1|S2|A|1421, 9P8B|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8B|1|S2|C|1416
9P8B|1|S2|C|1417
9P8B|1|S2|C|1418
9P8B|1|S2|C|1419
9P8B|1|S2|G|1420
9P8B|1|S2|A|1421
9P8B|1|S2|G|1422
9P8B|1|S2|C|1423
9P8B|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

40S ribosomal protein S19