HL_9P8C_080
3D structure
- PDB id
- 9P8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 9P8C|1|S2|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9P8C_080 not in the Motif Atlas
- Homologous match to HL_9PN5_077
- Geometric discrepancy: 0.0856
- The information below is about HL_9PN5_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.4
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9P8C|1|S2|G|7
9P8C|1|S2|U|8
9P8C|1|S2|U|9
9P8C|1|S2|G|10
9P8C|1|S2|A|11
9P8C|1|S2|U|12
9P8C|1|S2|C|13
9P8C|1|S2|C|14
9P8C|1|S2|U|15
9P8C|1|S2|G|16
9P8C|1|S2|C|17
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- SERPINE1 mRNA-binding protein 1
- Chain SC
- 40S ribosomal protein S2
- Chain SX
- 40S ribosomal protein S23
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