HL_9P8C_109
3D structure
- PDB id
- 9P8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CGUUCAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9P8C_109 not in the Motif Atlas
- Geometric match to HL_8GLP_113
- Geometric discrepancy: 0.1993
- The information below is about HL_8GLP_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.5
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9P8C|1|S2|C|1460
9P8C|1|S2|G|1461
9P8C|1|S2|U|1462
9P8C|1|S2|U|1463
9P8C|1|S2|C|1464
9P8C|1|S2|A|1465
9P8C|1|S2|G|1466
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SR
- Small ribosomal subunit protein eS17
- Chain Sc
- 40S ribosomal protein S28
- Chain Sg
- Receptor of activated protein C kinase 1
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