HL_9P9H_006

3D structure

PDB id

9P9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9P9H|1|L5|G|135, 9P9H|1|L5|C|136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P9H_006 not in the Motif Atlas

Homologous match to HL_9H3G_008

Geometric discrepancy: 0.5918

The information below is about HL_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.6

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9P9H|1|L5|C|131
9P9H|1|L5|G|132
9P9H|1|L5|C|133
9P9H|1|L5|G|134
9P9H|1|L5|G|135
9P9H|1|L5|C|136
9P9H|1|L5|G|137

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37