HL_9P9J_026

3D structure

PDB id

9P9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUGGGGCCGAAACGAUCUCA

Length

20 nucleotides

Bulged bases

9P9J|1|L5|U|1757, 9P9J|1|L5|C|1763, 9P9J|1|L5|A|1765, 9P9J|1|L5|A|1766, 9P9J|1|L5|A|1767, 9P9J|1|L5|G|1769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9J|1|L5|U|1756
9P9J|1|L5|U|1757
9P9J|1|L5|G|1758
9P9J|1|L5|G|1759
9P9J|1|L5|G|1760
9P9J|1|L5|G|1761
9P9J|1|L5|C|1762
9P9J|1|L5|C|1763
9P9J|1|L5|G|1764
9P9J|1|L5|A|1765
9P9J|1|L5|A|1766
9P9J|1|L5|A|1767
9P9J|1|L5|C|1768
9P9J|1|L5|G|1769
9P9J|1|L5|A|1770
9P9J|1|L5|U|1771
9P9J|1|L5|C|1772
9P9J|1|L5|U|1773
9P9J|1|L5|C|1774
9P9J|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like