HL_9P9J_059

3D structure

PDB id

9P9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GACAUGAGAACUCUGAUCGUU

Length

21 nucleotides

Bulged bases

9P9J|1|L5|A|3947, 9P9J|1|L5|A|4056, 9P9J|1|L5|C|4057, 9P9J|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9J|1|L5|G|3946
9P9J|1|L5|A|3947
9P9J|1|L5|C|3948
9P9J|1|L5|A|3949
9P9J|1|L5|U|3950
9P9J|1|L5|G|3951
9P9J|1|L5|A|3952
9P9J|1|L5|G|3953
9P9J|1|L5|A|3954
9P9J|1|L5|A|4056
9P9J|1|L5|C|4057
9P9J|1|L5|U|4058
9P9J|1|L5|C|4059
9P9J|1|L5|U|4060
9P9J|1|L5|G|4061
9P9J|1|L5|A|4062
9P9J|1|L5|U|4063
9P9J|1|L5|C|4064
9P9J|1|L5|G|4065
9P9J|1|L5|U|4066
9P9J|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36