HL_9P9K_022

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P9K_022 not in the Motif Atlas

Homologous match to HL_8GLP_022

Geometric discrepancy: 0.0717

The information below is about HL_8GLP_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9P9K|1|L5|G|1561
9P9K|1|L5|G|1562
9P9K|1|L5|A|1563
9P9K|1|L5|A|1564
9P9K|1|L5|A|1565
9P9K|1|L5|C|1566

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L37a