HL_9P9K_060

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

9P9K|1|L5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9K|1|L5|A|4098
9P9K|1|L5|G|4099
9P9K|1|L5|C|4100
9P9K|1|L5|C|4101
9P9K|1|L5|C|4102
9P9K|1|L5|C|4103
9P9K|1|L5|G|4104
9P9K|1|L5|A|4105
9P9K|1|L5|G|4106
9P9K|1|L5|G|4107
9P9K|1|L5|G|4108
9P9K|1|L5|G|4109
9P9K|1|L5|C|4110
9P9K|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34