HL_9PA7_002
3D structure
- PDB id
- 9PA7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S consensus ribosome with EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GCCUAACACGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PA7_002 not in the Motif Atlas
- Homologous match to HL_4QEI_002
- Geometric discrepancy: 0.3578
- The information below is about HL_4QEI_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_10874.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PA7|1|AT|G|31
9PA7|1|AT|C|32
9PA7|1|AT|C|33
9PA7|1|AT|U|34
9PA7|1|AT|A|35
9PA7|1|AT|A|36
9PA7|1|AT|C|37
9PA7|1|AT|A|38
9PA7|1|AT|C|39
9PA7|1|AT|G|40
9PA7|1|AT|C|41
Current chains
- Chain AT
- A/T site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SX
- 40S ribosomal protein S23
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