HL_9PA7_003
3D structure
- PDB id
- 9PA7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S consensus ribosome with EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PA7_003 not in the Motif Atlas
- Homologous match to HL_7K98_003
- Geometric discrepancy: 0.2609
- The information below is about HL_7K98_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9PA7|1|AT|G|54
9PA7|1|AT|U|55
9PA7|1|AT|U|56
9PA7|1|AT|C|57
9PA7|1|AT|G|58
9PA7|1|AT|A|59
9PA7|1|AT|A|60
9PA7|1|AT|A|61
9PA7|1|AT|C|62
Current chains
- Chain AT
- A/T site tRNA
Nearby chains
- Chain CF
- Elongation factor 1-alpha 1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lt
- Large ribosomal subunit protein uL11
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