HL_9PA7_015

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

9PA7|1|L5|G|1178, 9PA7|1|L5|U|1179, 9PA7|1|L5|C|1181, 9PA7|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|1172
9PA7|1|L5|G|1173
9PA7|1|L5|G|1174
9PA7|1|L5|A|1175
9PA7|1|L5|C|1176
9PA7|1|L5|U|1177
9PA7|1|L5|G|1178
9PA7|1|L5|U|1179
9PA7|1|L5|C|1180
9PA7|1|L5|C|1181
9PA7|1|L5|C|1182
9PA7|1|L5|C|1183
9PA7|1|L5|A|1184
9PA7|1|L5|G|1185
9PA7|1|L5|U|1186
9PA7|1|L5|G|1187
9PA7|1|L5|C|1188
9PA7|1|L5|G|1189

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like