HL_9PA7_024

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9PA7|1|L5|U|1596, 9PA7|1|L5|A|1600, 9PA7|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|A|1593
9PA7|1|L5|C|1594
9PA7|1|L5|G|1595
9PA7|1|L5|U|1596
9PA7|1|L5|G|1597
9PA7|1|L5|C|1598
9PA7|1|L5|A|1599
9PA7|1|L5|A|1600
9PA7|1|L5|A|1601
9PA7|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37