HL_9PA7_051

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

(PSU)UUAAUUAAAA

Length

11 nucleotides

Bulged bases

9PA7|1|L5|A|3642, 9PA7|1|L5|A|3643, 9PA7|1|L5|U|3644, 9PA7|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|PSU|3639
9PA7|1|L5|U|3640
9PA7|1|L5|U|3641
9PA7|1|L5|A|3642
9PA7|1|L5|A|3643
9PA7|1|L5|U|3644
9PA7|1|L5|U|3645
9PA7|1|L5|A|3646
9PA7|1|L5|A|3647
9PA7|1|L5|A|3648
9PA7|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37