HL_9PA7_060

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9PA7|1|L5|A|4214, 9PA7|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|U|4210
9PA7|1|L5|C|4211
9PA7|1|L5|A|4212
9PA7|1|L5|A|4213
9PA7|1|L5|A|4214
9PA7|1|L5|C|4215
9PA7|1|L5|G|4216
9PA7|1|L5|G|4217
9PA7|1|L5|U|4218
9PA7|1|L5|A|4219
9PA7|1|L5|6MZ|4220
9PA7|1|L5|C|4221
9PA7|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29