HL_9PA7_065

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

U(PSU)UGGGUUU(PSU)A

Length

11 nucleotides

Bulged bases

9PA7|1|L5|U|4354

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|U|4352
9PA7|1|L5|PSU|4353
9PA7|1|L5|U|4354
9PA7|1|L5|G|4355
9PA7|1|L5|G|4356
9PA7|1|L5|G|4357
9PA7|1|L5|U|4358
9PA7|1|L5|U|4359
9PA7|1|L5|U|4360
9PA7|1|L5|PSU|4361
9PA7|1|L5|A|4362

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a