HL_9PBE_024

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

9PBE|1|L5|C|1762, 9PBE|1|L5|C|1763, 9PBE|1|L5|A|1765, 9PBE|1|L5|A|1766, 9PBE|1|L5|A|1767, 9PBE|1|L5|G|1769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|1759
9PBE|1|L5|G|1760
9PBE|1|L5|G|1761
9PBE|1|L5|C|1762
9PBE|1|L5|C|1763
9PBE|1|L5|G|1764
9PBE|1|L5|A|1765
9PBE|1|L5|A|1766
9PBE|1|L5|A|1767
9PBE|1|L5|C|1768
9PBE|1|L5|G|1769
9PBE|1|L5|A|1770
9PBE|1|L5|U|1771
9PBE|1|L5|C|1772
9PBE|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18