HL_9PBE_053

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9PBE|1|L5|A|3876, 9PBE|1|L5|A|3877, 9PBE|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|3873
9PBE|1|L5|G|3874
9PBE|1|L5|G|3875
9PBE|1|L5|A|3876
9PBE|1|L5|A|3877
9PBE|1|L5|C|3878
9PBE|1|L5|G|3879
9PBE|1|L5|G|3880
9PBE|1|L5|G|3881
9PBE|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32