HL_9PBE_057

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9PBE|1|L5|A|4214, 9PBE|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PBE_057 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.0329

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9PBE|1|L5|U|4210
9PBE|1|L5|C|4211
9PBE|1|L5|A|4212
9PBE|1|L5|A|4213
9PBE|1|L5|A|4214
9PBE|1|L5|C|4215
9PBE|1|L5|G|4216
9PBE|1|L5|G|4217
9PBE|1|L5|U|4218
9PBE|1|L5|A|4219
9PBE|1|L5|6MZ|4220
9PBE|1|L5|C|4221
9PBE|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29